PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G090900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ZF-HD
Protein Properties Length: 317aa    MW: 34355.8 Da    PI: 8.4156
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G090900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.43.9e-3462118459
          ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                          ++YkeClkNhAa+lGgha+DGCgEfmps++++ ++++++kCaACgCHRnFHRre+e+
  Manes.01G090900.1.p  62 ITYKECLKNHAATLGGHALDGCGEFMPSPTANpNDPTSIKCAACGCHRNFHRREPED 118
                          79******************************9*********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.7E-2862116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2362121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.9E-3163115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.10264115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.08E-18186260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-29194260IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-25199256IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDIAPTTTST NNNTPTAKSP DLESETLPRI QSPNPVSFTN GVLKRHSSHH HHLHLSPPPV  60
VITYKECLKN HAATLGGHAL DGCGEFMPSP TANPNDPTSI KCAACGCHRN FHRREPEDSP  120
PPTNTTTTIE YQPHHRHHPP PPPPQAVPQP YRSPNSASPP PISSSYPSAP HMLLALSGGL  180
SAGLNGNSTI NVPGGSSGRK RFRSKFSQNQ KERMHEFAEK VGWKIQKRDE ELIQEFCNEV  240
GVDRGVLKVW MHNNKNTLGK RDANGNGTRS NDLGNSHYTT TTTTTTNNSS ENVNHHHLFE  300
SDNVAHAGTN GSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A6e-211992571775ZF-HD homeobox family protein
1wh7_A6e-212002571875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084702.11e-129PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG02e-77ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLB9T6Z31e-109B9T6Z3_RICCO; Putative uncharacterized protein
STRINGPOPTR_0017s11920.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-35homeobox protein 34